rs33632258 SNP Detail

Summary

• ID
  rs33632258
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12517476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATAGAAA GCTGTTGGAG
  AATACGGTAC CCATATATTA TCAAAATGTC TAAGATTATT TGATTCATGA AGGAAAAAAA
  AGTCTCCAGC TTCCCACAAC ACCAAGCATC TTCCTGGTGA TGCATTAGAG ACACAATAGA
  ACTTGGTGTT GCTTCTCTTG TTTTACAAAT ATGAGGGTTT TTTCATAACT GAGTTATTTT
  W
  AAAATCCACA AAACTAAATT AAGGGCTAGA CTTTCCAATA ATATCAACGT TACAGAAGAA
  CAAAAAAAAC AAACAAAAAC CAAAAAACCC ACCAAGTCAA AACAAACAAA CCAAAACCAA
  AACAAACAAG AGAGAGAGAG ACGCCTGGGA AACTATCCTA AAGATTAACC CCAATGTAAA
  TCAAATATGA CTTTTGACTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46837306	NES10986537	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33632258					SNP	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46837306	NES10986537	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12517476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	1030 bp proximal
Gm4984	predicted pseudogene 4984	1066 bp upstream
Rr2752	regulatory region 2752	1676 bp distal
Rr2753	regulatory region 2753	325 bp proximal
Tssr160565	transcription start site region 160565	1001 bp upstream
Tssr160566	transcription start site region 160566	1011 bp upstream
Tssr160567	transcription start site region 160567	1035 bp upstream