rs33632261 SNP Detail

Summary

• ID
  rs33632261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12517679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCACAAA ACTAAATTAA
  GGGCTAGACT TTCCAATAAT ATCAACGTTA CAGAAGAACA AAAAAAACAA ACAAAAACCA
  AAAAACCCAC CAAGTCAAAA CAAACAAACC AAAACCAAAA CAAACAAGAG AGAGAGAGAC
  GCCTGGGAAA CTATCCTAAA GATTAACCCC AATGTAAATC AAATATGACT TTTGACTGGA
  Y
  TTTGAGTTTG TCCTAACAAG AATGAGATAG AAGAAAACAC AAAGATAGTC CTCAATTTCT
  AACCTTTAAA TATGTATTTA ATAATAGTGA TGTCCTGAAT ATTTATGAGT GACTGATGGT
  ATTGTGGCTT TTGTTCCTAA GAGATAGATA CTAAAATATT TTGGGGTGAA GTGGCATACT
  AAGTCTTCAA ATTAATAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46837309	NES10986519	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33632261					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46837309	NES10986519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12517679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	827 bp proximal
Gm4984	predicted pseudogene 4984	863 bp upstream
Rr2752	regulatory region 2752	1879 bp distal
Rr2753	regulatory region 2753	122 bp proximal
Tssr160565	transcription start site region 160565	798 bp upstream
Tssr160566	transcription start site region 160566	808 bp upstream
Tssr160567	transcription start site region 160567	832 bp upstream