rs33632860 SNP Detail

Summary

• ID
  rs33632860
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106341451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG TGATGAGTTT GAGTCGAACT
  K
  CCCAGCTTCT CCATGGTACA GATAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46299450	mCV25135256	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	T
ss136936748	ENSMUSSNP721162	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss323185274	CHEV_9_106366583	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33632860					SNP	T	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106341451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	1606 bp distal
Cpgi22268	CpG island 22268	234 bp proximal
Gpr62	G protein-coupled receptor 62	within coordinates
Pcbp4	poly(rC) binding protein 4	240 bp downstream
Tssr86915	transcription start site region 86915	1048 bp downstream
Tssr86916	transcription start site region 86916	980 bp downstream
Tssr86917	transcription start site region 86917	840 bp downstream
Tssr86918	transcription start site region 86918	701 bp downstream
Tssr86919	transcription start site region 86919	436 bp downstream
Tssr91318	transcription start site region 91318	633 bp downstream
Tssr91319	transcription start site region 91319	650 bp downstream
Tssr91320	transcription start site region 91320	1035 bp downstream
Tssr91321	transcription start site region 91321	1713 bp downstream