rs33633109 SNP Detail

Summary

• ID
  rs33633109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12518402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTAGAG CCCTCAGTTC
  CTTGCCTTTG CATGGGTCTG GGTGTAGGAA GAGCTACAAG CTACATAAAG CCCCTCCTCC
  CACAGCAATC ATACGGAAGG GCGCATGTGC GCAGGCCCCA TGGGCTACAG CCATAAGCCG
  CCACTTTCCT TGCCAAAAGC CTCAAGTCAG CTGAGGACGT CAACTGAGCA CGTCAGCAGC
  R
  CGTGAACTGG TGTCCTTTAT GGCAGAGGCG CAAAAGCACA AAGCGGCTGC TGCGTCAGGG
  TCTTCTGTGA GGTCCGCATT TCTGTGCTCA TTTGGTGGCT GGCAGCTTGG CTGTAGGCAC
  TTCTCCGACT GAGGCGACCA TGGCAGCAGT AGCAGCGCTA ATGCGGAAAA CGCTAGATTA
  TCTTAAGACC AAGGAGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss46837318	NES10986447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs33633109					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46837318	NES10986447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12518402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	104 bp proximal
Gm4984	predicted pseudogene 4984	140 bp upstream
Rr2753	regulatory region 2753	402 bp distal
Tssr160565	transcription start site region 160565	75 bp upstream
Tssr160566	transcription start site region 160566	85 bp upstream
Tssr160567	transcription start site region 160567	109 bp upstream