rs33634045 SNP Detail

Summary

• ID
  rs33634045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30303433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGAGGA GGCCCAGGGG
  TTTTACCTGT GGGATGCAGA ACAGCCTACT CATTCTCTCA GACTGAAGCA CAGCTCTTTC
  TAAACTACAC TCCTAGGCCT TATATGCCAT CCCCTGGAGG CAAAGACAGC TTCATGGGTG
  GGGCCTGCCC TAGATGCCCA GCCCTCAAGG TACAGGAGTA CCGTCTCTCA GGGGCCTATA
  K
  ATGCAGGAAG GCTAGGAAAG GGTGGGGGTG TAGATGAGTC ACATTATTGG GGTGGCAGAG
  GTAAGGGGAC CTCCCACCTG TCAGGACGCA CGAGAGAGAT GGCAGCTGAC TCTTTAAGCG
  AAGCCCCCCC ATGTCTCACC CCCCCCCCCC CCGCTTCCAG CTTAAGAAAT CGGAGAGAAC
  TGGAAATGGG TAAGCTGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45301967	mCV23383215	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss146398616	ENSMUSSNP2008604	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33634045					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30303433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11436	CpG island 11436			1670 bp proximal
Crat	carnitine acetyltransferase			Intron
				Noncoding-Transcript-Variant
Gm16323	predicted gene 16323			295 bp upstream
Rr554310	regulatory region 554310			205 bp proximal
Rr554311	regulatory region 554311			306 bp proximal
Rr554312	regulatory region 554312			1263 bp proximal
Tssr23368	transcription start site region 23368			122 bp upstream
Tssr23369	transcription start site region 23369			683 bp downstream
Tssr23370	transcription start site region 23370			748 bp downstream
Tssr23371	transcription start site region 23371			1881 bp downstream
Tssr23372	transcription start site region 23372			1968 bp downstream
Tssr23373	transcription start site region 23373			1997 bp downstream