rs33634054 SNP Detail

Summary

• ID
  rs33634054
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46966736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGGTGTT CCATAAAATG AAGTTCAGAG ATTATAAGGT
  TAACATAATT AGCAAAGCAT AAATCTGACC AGTCAGTTAA CCATGATGAC TTTCAAAAAA
  W
  GTCTTTAATT TTGCTCAGAT TTCTTCCTAT CATTTTCATC CCTGGGACTG TGCTAAAGCT
  ATGTGCCTTT CTGGCATCTC CTAAATGGAG CTACTTTTCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss47322099	NES11090327	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs33634054					SNP	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322099	NES11090327	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46966736 () rs orientation: forward

Symbol	Name	Function Class
Tssr11557	transcription start site region 11557	1804 bp upstream
Tssr11558	transcription start site region 11558	1772 bp upstream