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rs33635152 SNP Detail
Summary
  • ID
    rs33635152
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:84494015 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CAAACGCTCG CAGGTCCCCG GAGGCGCCGC CGCCCCCCGA
    CGGCGCGGGC CGCCGCTCGT CCGCGTTGTG GATGAAGTGG CAGCGCGGGC CGTAGGGGCA
    R
    AAGCCGATGG TGTGGAAGGT GCGGCACAGC TCTGTCTTGT ACTTGGGGTG CCGGGTGAGG
    CTGCGCAGCT CGTGGAAGCC GTGCGCGAAC TGGCACTTC                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
C57BL/6J
DBA/2J
ss39559696 mCV23110575 ABI CRAMUS_MOUSE f SNP G G A
SNP Consensus Information
SNP Consensus Type
A/J
C57BL/6J
DBA/2J
rs33635152 SNP G G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84494015 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 within coordinates
Cpgi9566 CpG island 9566 1024 bp proximal
Gm56881 predicted gene, 56881 1560 bp upstream
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 1286 bp upstream
Tssr146044 transcription start site region 146044 826 bp downstream
Tssr146045 transcription start site region 146045 503 bp upstream
Tssr149650 transcription start site region 149650 1000 bp upstream
Tssr149651 transcription start site region 149651 946 bp upstream
Tssr149652 transcription start site region 149652 566 bp upstream
Tssr149653 transcription start site region 149653 514 bp upstream
Tssr149654 transcription start site region 149654 390 bp upstream
Tssr149655 transcription start site region 149655 246 bp upstream
Tssr149656 transcription start site region 149656 205 bp upstream
Tssr149657 transcription start site region 149657 within coordinates
Tssr149658 transcription start site region 149658 47 bp downstream
Tssr149659 transcription start site region 149659 82 bp downstream
Tssr149660 transcription start site region 149660 113 bp downstream
Tssr149661 transcription start site region 149661 162 bp downstream
Tssr149662 transcription start site region 149662 221 bp downstream
Tssr149663 transcription start site region 149663 285 bp downstream
Tssr149664 transcription start site region 149664 326 bp downstream
Tssr149665 transcription start site region 149665 371 bp downstream
Tssr149666 transcription start site region 149666 440 bp downstream
Tssr149667 transcription start site region 149667 529 bp downstream
Tssr149668 transcription start site region 149668 584 bp downstream
Tssr149669 transcription start site region 149669 617 bp downstream
Tssr149670 transcription start site region 149670 1150 bp downstream
Tssr149671 transcription start site region 149671 1240 bp downstream
Tssr149672 transcription start site region 149672 1352 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory