rs33635888 SNP Detail

Summary

• ID
  rs33635888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56980947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT ACGTGAGGTA CAAGCCCCCG
  Y
  CCCTGTTTCT GATTGGCGAA TTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46299879	mCV25254771	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss136516070	ENSMUSSNP895416	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322971278	CHEV_9_56921470	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33635888					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56980947 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	1540 bp downstream
Cpgi21807	CpG island 21807	within coordinates
Cpgi21808	CpG island 21808	791 bp proximal
Gm10658	predicted gene 10658	1697 bp upstream
Gm57026	predicted gene, 57026	79 bp upstream
Rr368762	regulatory region 368762	within coordinates
Rr401391	regulatory region 401391	1562 bp downstream
Rr401392	regulatory region 401392	1511 bp upstream
Rr679580	regulatory region 679580	1732 bp distal
Rr679581	regulatory region 679581	1205 bp distal
Rr679582	regulatory region 679582	588 bp distal
Rr679583	regulatory region 679583	within coordinates
Rr679584	regulatory region 679584	167 bp distal
Rr679585	regulatory region 679585	87 bp distal
Rr679586	regulatory region 679586	1185 bp proximal
Rr679587	regulatory region 679587	1686 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	within coordinates
Tssr2884	transcription start site region 2884	1772 bp upstream
Tssr85282	transcription start site region 85282	1615 bp downstream
Tssr85283	transcription start site region 85283	1587 bp downstream
Tssr85284	transcription start site region 85284	72 bp upstream
Tssr85285	transcription start site region 85285	195 bp upstream
Tssr89752	transcription start site region 89752	1801 bp upstream
Tssr89753	transcription start site region 89753	1758 bp upstream