rs33636009 SNP Detail

Summary

• ID
  rs33636009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142948979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGG AGGGAATCCT GCAGATGACG
  R
  GTACTCCAGA GCCTAGAGAG ACCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	WSB/EiJ
ss45803591	mCV23387553	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				A	G
ss51533817	NES14872368	PERLEGEN	MM_PANEL2	f	SNP			A	G	A	A			A
ss144594702	ENSMUSSNP1300330	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	WSB/EiJ
rs33636009					SNP	G	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533817	NES14872368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142948979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	1700 bp distal
Cpgi16968	CpG island 16968	710 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	within coordinates
Rr378736	regulatory region 378736	within coordinates
Rr624075	regulatory region 624075	1379 bp distal
Rr624076	regulatory region 624076	1213 bp proximal
Tssr49618	transcription start site region 49618	454 bp upstream