rs33636652 SNP Detail

Summary

• ID
  rs33636652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87741715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCATCCA TAGGACAAGC
  CAGCGTGACC ACACACTGCA CCTCTGTCCC TTCCTTCAAT CACCTCAGCA GCAGGGAAGC
  CAGTTAATGG CCAAAGCTTA TCTTCATAAT CACTAGAAAC TTAGATAGAT CATTAAACAT
  GAGGCAATTA ATGTTGGGGC TGAGGGATAG AGCTTACTGT ACAACACTTG CCTAGCAGAG
  R
  TAAGACCCAG AGTTCAATCC CCAGGAACAG AATGGGAGGG AGAGCATTCT TGCCTTACTT
  GGCTTACTTT ACACTTGATT TTTATTTTTT TATTTTTTAT TTTTTTTCTT TTTTCCGGAG
  CTGAGGACCG AACCTAGGGC CTTGGGCTTG CTAGGCAAGC ACTTTACCAC TGAGCTAAAT
  CCCCAACCCC CACACTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39560349	mCV22771345	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss146179870	ENSMUSSNP5320966	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33636652					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87741715 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	within coordinates
Tssr149769	transcription start site region 149769	337 bp upstream