rs33636843 SNP Detail

Summary

• ID
  rs33636843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47007513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCCTGG TCATGGAGTT
  TCACTAATCT CATTATGCTT TATATTAGGT TATTTAAAAA ATAGTCATAA TTTACATTAA
  GTTTACCAAA TAAAATAAAT CTTGTTCCCT AACATATCTG TAAGATTTAA TGCTTATTTT
  GTGAAGTTTG AAAGGTGGAT GAATAAAAAA TAATTCAGAG TGAAGAATGG CCTTCATGGT
  Y
  TGTACAAATG GTTTGAAAAG AACAAGAGAG GCCTTGTGTT TCATTAGGAT AACACACTGA
  GGATGCAATC TCGATTTCTA AGACAAAACC AGATAGGATA ACTTTTAGAT AGTCTTGTGA
  AGAAATTCAA GGCCAAAGCC CAGACAGCTA AACACCCCCT GAAGGTCAGA TTAAGACCAC
  AAGACGATTT TGTCCACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47322486	NES11088672	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33636843					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322486	NES11088672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47007513 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	1434 bp upstream
Rr410625	regulatory region 410625	1181 bp distal