rs33637131 SNP Detail

Summary

• ID
  rs33637131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119573534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA GGCAGGCGAT GGTAACTGAG
  Y
  GCCTGGGCGT CTAAAGGAGG TTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45302061	mCV22556909	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147341066	ENSMUSSNP5994735	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss320477109	CHEV_2_119568789	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33637131					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119573534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm75736	predicted gene, 75736	within coordinates
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563568	regulatory region 563568	706 bp distal
Rr563569	regulatory region 563569	984 bp distal
Rr563570	regulatory region 563570	942 bp distal
Rr563571	regulatory region 563571	132 bp proximal
Rr563572	regulatory region 563572	164 bp proximal
Rr563573	regulatory region 563573	1465 bp proximal
Rr563574	regulatory region 563574	1633 bp proximal
Tssr19656	transcription start site region 19656	748 bp downstream
Tssr19657	transcription start site region 19657	722 bp downstream
Tssr19658	transcription start site region 19658	698 bp downstream
Tssr25827	transcription start site region 25827	107 bp downstream