rs33637880 SNP Detail

Summary

• ID
  rs33637880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143831019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTC CATGTCCTTA CTGTGATTGG
  Y
  AGAGCTGAGG ATGCTGGGTC CTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45802871	mCV23731821	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		C
ss60852801	NES16001020	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		C	C	C	C		C	C	C	C		C
ss144604659	ENSMUSSNP2736	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321708647	CHEV_5_144655070	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33637880					SNP	T	T	C	T	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852801	NES16001020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143831019 () rs orientation: forward

Symbol	Name	Function Class
Ankrd61	ankyrin repeat domain 61	within coordinates
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	within coordinates
Rr624304	regulatory region 624304	1738 bp distal
Tssr54383	transcription start site region 54383	785 bp downstream
Tssr54384	transcription start site region 54384	824 bp downstream
Tssr54385	transcription start site region 54385	877 bp downstream