rs33638305 SNP Detail

Summary

• ID
  rs33638305
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCTTGT TTGTATTTAT
  TTTATTTGGA GACAGTGTCT CCACTAGCCC AGGCTAGACT CAGATGAGCT CTGATCTTTC
  TGCCCCATCT CCCAAGTGCT GGGGGTTTCA AGGATGGTCC ACCACTGTTA CTCTGTGCTG
  AGACAAACCC AGAGCTCTGT GCATGCAAGG CAAGCCCTCT ACCACCTGAG CTGCCTGCCA
  M
  GCCCAGACTG TTCATTGTAT AGACTTGCCC GCTATGGAGT GTAACCAAGC ACTCATGTTC
  ACAGGGTTGA GGATGTCTGC AGAAGCACTC TCACACCAAC AGCCTTCCTC TCATCTGCCC
  CTCTTCATGC CTGTGTTGGT ATGCAGGTGG TCTCCATCCA TCCCCGGTGT ATCTTCATGA
  GCCCCTGGCT GAAGGGGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss46299954	mCV24051266	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs33638305					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143136 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1369 bp downstream
Apoc3	apolipoprotein C-III	1212 bp downstream
Cpgi21701	CpG island 21701	1333 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1517 bp proximal
Rr206362	regulatory region 206362	735 bp distal
Rr206363	regulatory region 206363	1664 bp proximal
Tssr84847	transcription start site region 84847	1930 bp downstream
Tssr84848	transcription start site region 84848	1852 bp downstream
Tssr84849	transcription start site region 84849	1816 bp downstream
Tssr84850	transcription start site region 84850	1774 bp downstream
Tssr84851	transcription start site region 84851	1739 bp downstream
Tssr84852	transcription start site region 84852	1642 bp downstream
Tssr84853	transcription start site region 84853	1608 bp downstream
Tssr84854	transcription start site region 84854	1595 bp downstream
Tssr84855	transcription start site region 84855	1575 bp downstream
Tssr84856	transcription start site region 84856	1564 bp downstream
Tssr84857	transcription start site region 84857	1442 bp downstream
Tssr84858	transcription start site region 84858	1405 bp downstream
Tssr84859	transcription start site region 84859	1294 bp upstream
Tssr84860	transcription start site region 84860	1433 bp upstream
Tssr84861	transcription start site region 84861	1479 bp upstream
Tssr89313	transcription start site region 89313	1863 bp upstream
Tssr89314	transcription start site region 89314	1835 bp upstream
Tssr89315	transcription start site region 89315	1812 bp upstream
Tssr89316	transcription start site region 89316	1792 bp upstream
Tssr89317	transcription start site region 89317	1783 bp upstream
Tssr89318	transcription start site region 89318	1759 bp upstream
Tssr89319	transcription start site region 89319	1749 bp upstream
Tssr89320	transcription start site region 89320	1736 bp upstream
Tssr89321	transcription start site region 89321	1711 bp upstream
Tssr89322	transcription start site region 89322	1628 bp upstream
Tssr89323	transcription start site region 89323	1576 bp upstream
Tssr89324	transcription start site region 89324	1548 bp upstream
Tssr89325	transcription start site region 89325	1523 bp upstream
Tssr89326	transcription start site region 89326	1489 bp upstream
Tssr89327	transcription start site region 89327	1375 bp upstream
Tssr89328	transcription start site region 89328	1261 bp downstream
Tssr89329	transcription start site region 89329	1332 bp downstream
Tssr89330	transcription start site region 89330	1378 bp downstream
Tssr89331	transcription start site region 89331	1411 bp downstream
Tssr89332	transcription start site region 89332	1486 bp downstream