rs33638425 SNP Detail

Summary

• ID
  rs33638425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47007592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTACCAA ATAAAATAAA
  TCTTGTTCCC TAACATATCT GTAAGATTTA ATGCTTATTT TGTGAAGTTT GAAAGGTGGA
  TGAATAAAAA ATAATTCAGA GTGAAGAATG GCCTTCATGG TCTGTACAAA TGGTTTGAAA
  AGAACAAGAG AGGCCTTGTG TTTCATTAGG ATAACACACT GAGGATGCAA TCTCGATTTC
  Y
  AAGACAAAAC CAGATAGGAT AACTTTTAGA TAGTCTTGTG AAGAAATTCA AGGCCAAAGC
  CCAGACAGCT AAACACCCCC TGAAGGTCAG ATTAAGACCA CAAGACGATT TTGTCCACTT
  GGGAACAAAA AACAAGCTCA AAGCTTGTCT GTGGGCAATG CTGACTCAAT CTCTGTTGGC
  AGTCAAGTAA CTGTAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47322489	NES11088673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33638425					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322489	NES11088673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47007592 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	1355 bp upstream
Rr410625	regulatory region 410625	1260 bp distal