rs33638427 SNP Detail

Summary

• ID
  rs33638427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47007803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAGGAT AACTTTTAGA
  TAGTCTTGTG AAGAAATTCA AGGCCAAAGC CCAGACAGCT AAACACCCCC TGAAGGTCAG
  ATTAAGACCA CAAGACGATT TTGTCCACTT GGGAACAAAA AACAAGCTCA AAGCTTGTCT
  GTGGGCAATG CTGACTCAAT CTCTGTTGGC AGTCAAGTAA CTGTAGAGAG GAACCAGTCC
  R
  GTGTAAAGCC ACCTCTGAGG CCCCATTCGG ATCTCACCCT TGTAATCTGA GAATTCATTC
  CTGCCACAGA TCTTGGAATG GCTCAGTACT CCTAAGGAAA TGGAGAGGAG GAGATTCATA
  GAGGTGCCTT CAAGGACCCC TTTCATGTGA TTATTTATTT ATTTATTTAT TTATTTATTT
  ATTTGGCAAG GCCTGTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47322492	NES11088674	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33638427					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322492	NES11088674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47007803 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	1144 bp upstream
Rr410625	regulatory region 410625	1471 bp distal
Rr410626	regulatory region 410626	1921 bp proximal