rs33638429 SNP Detail

Summary

• ID
  rs33638429
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47008017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGGCCC CATTCGGATC
  TCACCCTTGT AATCTGAGAA TTCATTCCTG CCACAGATCT TGGAATGGCT CAGTACTCCT
  AAGGAAATGG AGAGGAGGAG ATTCATAGAG GTGCCTTCAA GGACCCCTTT CATGTGATTA
  TTTATTTATT TATTTATTTA TTTATTTATT TGGCAAGGCC TGTGCCTTTC TGCCTGGAAT
  K
  AACTGCAGAG CTTAACCTGA GCCTTGCCTG ACAATTCACC TGTACCCAGC TGCTGCTGGG
  CTTAGAAGCC CACTGCCAAT CACTCACTAG AAACCACAGT GCTCCCTTAA AGCTCAATGA
  GGTTCCTGCT GGAGTCCAAG GCCTAGGCAC AGTTGTTGTT CATGTAGTGT TCTTTATGCA
  GTAGACCGGA AATCTTGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss47322495	NES11088675	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33638429					SNP	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322495	NES11088675	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47008017 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	930 bp upstream
Rr410625	regulatory region 410625	1685 bp distal
Rr410626	regulatory region 410626	1707 bp proximal
Rr410627	regulatory region 410627	1848 bp proximal