rs33638431 SNP Detail

Summary

• ID
  rs33638431
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47008248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATTCACC TGTACCCAGC
  TGCTGCTGGG CTTAGAAGCC CACTGCCAAT CACTCACTAG AAACCACAGT GCTCCCTTAA
  AGCTCAATGA GGTTCCTGCT GGAGTCCAAG GCCTAGGCAC AGTTGTTGTT CATGTAGTGT
  TCTTTATGCA GTAGACCGGA AATCTTGGTG AGCTGGAACA AATATGACAC TGGAGTCAGA
  M
  AAAGGGTTCT CCTCTGAGTC AAAGTTCAGT ACCTGGGTTT TTATTCTTTC TTAGGGGTTT
  CACAGTCCTT TCTGTAAACA GTCCTCTGGT AAATCACACT GTCCACCTAG TAGATACAGC
  TGTACCTATT GAACTTTGGT AATATTGACT CTAGGTCACA ATCTAGATTA CAAGAGAATC
  CTAATATACA AGTTAATGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47322498	NES11088676	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33638431					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322498	NES11088676	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47008248 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	699 bp upstream
Rr410625	regulatory region 410625	1916 bp distal
Rr410626	regulatory region 410626	1476 bp proximal
Rr410627	regulatory region 410627	1617 bp proximal