rs33638608 SNP Detail

Summary

• ID
  rs33638608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:109691308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTAGACCGG GCATGGTGGC GAACGCCTTT AATCCCAGTG CTCGATCTGA GTTCGAGGCC
  AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA CACAGAGAAA CCCTGTCTCG
  GGGAGGGGGG TGGGGGGAGT CTTCCTTTAG TTACCTACCT ACATAGCCCA CACAGAACTC
  ATCACCTTTG CCCACTAGAG AATCACATCT CCCAGAATGT CCACCTCTGG ACACAAGTTT
  TGCAGTGTAG GATATGTGAC TATAACCTCC CTACTAGGGT GGCGTGGGGG ACACTGAGGA
  Y
  ACAAGCATAC CATATTCAGG CTACTTTTCA TGACTAGGAT TTGAACTCAG AGCCTCACAC
  ATGCAGACTT CTAAAGAGCA TACACACTCC ATGCTCTCTT GCTCACCTTG AATGGGTGGA
  CTCAGGCAAA ACTCAGACCA ACGGCTGTCA AGGTGCTGCT ATATAAGATG AATGGCCAGC
  AGAAATTAAT GATATAGCTG TGGGGTTCCT GGCCCTGAAC ACATCCCTCC ATAAGATGAG
  ACCTGGACTC AGATCCCAGG AACGGGTAGA CATTTATTTT CCCATTCATG CGTGCATTTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46300789	mCV23329686	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33638608					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:109691308 () rs orientation: forward

Symbol	Name	Function Class
Gm39427	predicted gene, 39427	within coordinates
Gm68591	predicted gene, 68591	within coordinates
Rr401695	regulatory region 401695	197 bp upstream
Rr687008	regulatory region 687008	86 bp proximal
Rr687009	regulatory region 687009	315 bp proximal
Rr687010	regulatory region 687010	361 bp proximal
Rr687011	regulatory region 687011	1850 bp proximal
Tssr87256	transcription start site region 87256	630 bp downstream
Tssr87257	transcription start site region 87257	600 bp downstream
Tssr87258	transcription start site region 87258	584 bp downstream