rs33638694 SNP Detail

Summary

• ID
  rs33638694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115473996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTAGTTC AATGACTGCT
  GCTTGTATGT GAGGCTCCGA ATTAAATCCC TAACACAGAA GGGAGAGAAA AAAAAAAACC
  CAACAAAAAC TGCAGTTGCA CCACGCAAAG GTGGCTACTG GTCTTTCTGG GACTTAGGGT
  TCTGTTGGAG GATCCCTAAG AGCATAGATC TTAAATCAGC TGACTTCAAG CCCTAATACA
  R
  CAAGGTACTT ATCACCTCTG TATTTTAAGT TTTCTTTATA AACATCAAAT GTACTTTAAG
  TTTTTATTAT TTATGTATGT GTATGTCTCT GTGGGTATGT GCACATGAGT ACAGGTGCTC
  GTGGAAGCCA AAGGCATCAG ATCCTCTGGA GTCAGAGTGA GAGGCAGTTG TGACCTGCCT
  GGCTGGTTTG GGTGCTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45803334	mCV24608144	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss60829319	NES16021026	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A		A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33638694					SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829319	NES16021026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115473996 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	within coordinates
Tssr52783	transcription start site region 52783	1873 bp upstream
Tssr52784	transcription start site region 52784	1842 bp upstream
Tssr52785	transcription start site region 52785	1768 bp upstream
Tssr52786	transcription start site region 52786	1697 bp upstream
Tssr52787	transcription start site region 52787	1657 bp upstream
Tssr52788	transcription start site region 52788	1439 bp upstream
Tssr52789	transcription start site region 52789	1406 bp upstream