rs33639471 SNP Detail

Summary

• ID
  rs33639471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106767948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA TCACACCAAA TTCATTCTGG
  Y
  CTTTGGGCAC TCCCATTGCC TGAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46300175	mCV22323044	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136941098	ENSMUSSNP1572958	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss323187631	CHEV_9_106793080	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33639471					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106767948 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	762 bp upstream
Cpgi22278	CpG island 22278	615 bp proximal
Manf	mesencephalic astrocyte-derived neurotrophic factor	Intron
Rr368849	regulatory region 368849	1151 bp upstream
Rr686409	regulatory region 686409	478 bp proximal
Rr686410	regulatory region 686410	656 bp proximal
Rr686411	regulatory region 686411	1038 bp proximal
Rr686412	regulatory region 686412	1206 bp proximal
Rr686413	regulatory region 686413	1220 bp proximal
Rr686414	regulatory region 686414	1476 bp proximal
Tssr86942	transcription start site region 86942	538 bp downstream
Tssr86943	transcription start site region 86943	1365 bp upstream
Tssr86944	transcription start site region 86944	1701 bp upstream
Tssr86945	transcription start site region 86945	1727 bp upstream
Tssr91353	transcription start site region 91353	617 bp downstream
Tssr91354	transcription start site region 91354	631 bp downstream
Tssr91355	transcription start site region 91355	645 bp downstream
Tssr91356	transcription start site region 91356	652 bp downstream
Tssr91357	transcription start site region 91357	1159 bp downstream
Tssr91358	transcription start site region 91358	1182 bp downstream
Tssr91359	transcription start site region 91359	1216 bp downstream