rs33639495 SNP Detail

Summary

• ID
  rs33639495
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC TCGGGACAAG TTCCTCGCCT
  M
  CCGCTGAGTC TCCGGCGCCC ACCCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45803275	mCV25003303	ABI	CRAMUS_MOUSE	f	SNP		A	C				C
ss61199543	NES16709301	PERLEGEN	MM_PANEL2	f	SNP	C			A	A	C		A		C	A	C
ss148904957	ENSMUSSNP5953791	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C				C
ss321623274	CHEV_5_98459930	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33639495					SNP	C	A	C	A	A	C	C	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199543	NES16709301	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178770 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	41 bp proximal
Tssr1554	transcription start site region 1554	41 bp downstream
Tssr47433	transcription start site region 47433	187 bp downstream
Tssr47434	transcription start site region 47434	175 bp downstream
Tssr47435	transcription start site region 47435	184 bp upstream
Tssr47436	transcription start site region 47436	353 bp upstream
Tssr47437	transcription start site region 47437	388 bp upstream
Tssr51988	transcription start site region 51988	295 bp upstream
Tssr51989	transcription start site region 51989	284 bp upstream
Tssr51990	transcription start site region 51990	264 bp upstream
Tssr51991	transcription start site region 51991	146 bp upstream
Tssr51992	transcription start site region 51992	91 bp upstream
Tssr51993	transcription start site region 51993	59 bp downstream
Tssr51994	transcription start site region 51994	83 bp downstream
Tssr51995	transcription start site region 51995	226 bp downstream
Tssr51996	transcription start site region 51996	386 bp downstream
Tssr51997	transcription start site region 51997	424 bp downstream
Tssr51998	transcription start site region 51998	464 bp downstream
Tssr51999	transcription start site region 51999	499 bp downstream
Tssr52000	transcription start site region 52000	520 bp downstream
Tssr52001	transcription start site region 52001	540 bp downstream
Tssr52002	transcription start site region 52002	560 bp downstream
Tssr52003	transcription start site region 52003	602 bp downstream