rs33639645 SNP Detail

Summary

• ID
  rs33639645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47008456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTCTGA GTCAAAGTTC
  AGTACCTGGG TTTTTATTCT TTCTTAGGGG TTTCACAGTC CTTTCTGTAA ACAGTCCTCT
  GGTAAATCAC ACTGTCCACC TAGTAGATAC AGCTGTACCT ATTGAACTTT GGTAATATTG
  ACTCTAGGTC ACAATCTAGA TTACAAGAGA ATCCTAATAT ACAAGTTAAT GGTGGAACAC
  Y
  AGTTTTACCC ATCTTTGCCC TTGAGTCAAT CCGGTGTAAA TAATCATCTA GTTCATAGAA
  TTGACAACAA TCAGGGGAGA TTATATTGCC CTTGAGTCAA TCCAGTGTAA ATAATAATAG
  TCCTTAGACT TGACTTCAAT CAGAGGACCT TCAAGACTGT GTAACTATGA CATGATATGG
  AGTCTCAAAA TACCAGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47322504	NES11088678	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33639645					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322504	NES11088678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47008456 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	491 bp upstream
Rr410626	regulatory region 410626	1268 bp proximal
Rr410627	regulatory region 410627	1409 bp proximal