rs33639647 SNP Detail

Summary

• ID
  rs33639647
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47008508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGTCCT TTCTGTAAAC
  AGTCCTCTGG TAAATCACAC TGTCCACCTA GTAGATACAG CTGTACCTAT TGAACTTTGG
  TAATATTGAC TCTAGGTCAC AATCTAGATT ACAAGAGAAT CCTAATATAC AAGTTAATGG
  TGGAACACCA GTTTTACCCA TCTTTGCCCT TGAGTCAATC CGGTGTAAAT AATCATCTAG
  K
  TCATAGAATT GACAACAATC AGGGGAGATT ATATTGCCCT TGAGTCAATC CAGTGTAAAT
  AATAATAGTC CTTAGACTTG ACTTCAATCA GAGGACCTTC AAGACTGTGT AACTATGACA
  TGATATGGAG TCTCAAAATA CCAGTTCAGA CAGAACCATG TGGATAATAT GGGAGGAGTG
  ATGGACAGTA CGGAAAAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47322507	NES11088679	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33639647					SNP	T	T	G	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322507	NES11088679	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47008508 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	439 bp upstream
Rr410626	regulatory region 410626	1216 bp proximal
Rr410627	regulatory region 410627	1357 bp proximal