rs33639649 SNP Detail

Summary

• ID
  rs33639649
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47009496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATATAG AATTTTCTTC
  TGCCTCAAGG ATATGGTCAC ATTTTTTTAA AAAAGAGAAA GAAAAGAAAG AGAGAGAGAG
  AGAGAGAGAG AGAGAACGAG GAGGAGGAAG AAGAAGAAGG AGGAGGAGGA AGATGAGGAG
  GAAGGATGAT GATGATAAAA TATCTTAAAT ATTTATTGAA AAGAATGAAA TGGCTTTAGA
  S
  AGTTTTTGAT GTTAGATTCA GATTTCTTTT ACAAGAGATG CCACAATAGA GCTGGTAGGT
  CTTCAAGCAC TAGAGATAGG TTGTGACAGT TGTAAAATAT CTTTTATCTG CCTCTTTAAA
  GATACAGCAA AGCCGAGGCT GAGCAGTAAT TAACCTAATC AGCTAGTTGA GGCAGAGAGC
  AGGCACAGAA ACAAAGCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47322510	NES11088680	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33639649					SNP	G	G	G	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322510	NES11088680	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47009496 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	within coordinates
Rr410626	regulatory region 410626	228 bp proximal
Rr410627	regulatory region 410627	369 bp proximal