rs33639651 SNP Detail

Summary

• ID
  rs33639651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47009630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGAAG GATGATGATG
  ATAAAATATC TTAAATATTT ATTGAAAAGA ATGAAATGGC TTTAGAGAGT TTTTGATGTT
  AGATTCAGAT TTCTTTTACA AGAGATGCCA CAATAGAGCT GGTAGGTCTT CAAGCACTAG
  AGATAGGTTG TGACAGTTGT AAAATATCTT TTATCTGCCT CTTTAAAGAT ACAGCAAAGC
  Y
  GAGGCTGAGC AGTAATTAAC CTAATCAGCT AGTTGAGGCA GAGAGCAGGC ACAGAAACAA
  AGCTGGCTCT GGCTCTGGCT CTGGCTCTGG CTCTGTGCTC CCTGTCTTCG TCTTTATCCT
  CTTAGTCCAT GGAGTGCTGA ATATATACTG TTCTGCCGAA TAACAAAGCT CATGTTTGCA
  GAACTTCTGC TGGCTAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47322513	NES11088681	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33639651					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47322513	NES11088681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47009630 () rs orientation: forward

Symbol	Name	Function Class
Gm70727	predicted gene, 70727	within coordinates
Rr410626	regulatory region 410626	94 bp proximal
Rr410627	regulatory region 410627	235 bp proximal