rs33640975 SNP Detail

Summary

• ID
  rs33640975
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:4332373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCATT CCCCAGCTGA
  ATTTCCAGGG TCTGATTGGG CTTGGAATGG GAGACACACA CTTGATAAGA TTTGTTGTTG
  TTATTCAATG GGTCGTCAAC CCTTTGACTA ATACTCTTCA AGTGGTCTTT TCCACTGGAG
  ATAATGACTA GGGTAGACTT TCTGAGACTG TATTCGCAGC AGGCTCCTCC TGCTCTAACT
  W
  GATCTTGGAG TTCTTATGAA CATGCACTCT CGATTCACAA TCAGATGAAG ACTGAATATA
  TGAAAACAGC AATGATATGG TGGGTCACTA CAACCTCATT ACCTTTTGGA AACAGACTAC
  AGGGCATTTA CTTCTGTGCT CTGAAGGATC ATCGTAAAAT TAAACCTCAG TTGTCAAAAC
  AAACAAGCAA AGTAAATTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48337459	NES12245644	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33640975					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48337459	NES12245644	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:4332373 () rs orientation: forward

Symbol	Name	Function Class
D17Brg125	DNA segment, Chr 17, David E. Bergstrom 125	664 bp distal
Tssr146295	transcription start site region 146295	486 bp upstream