rs33640981 SNP Detail

Summary

• ID
  rs33640981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:4330868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATATGT CTTTGTCACA
  TTTTGTCCAT GTGACCTGGG TCACATGTCA CTTGATGGAA ATCCCACCTT AGGTTTTTCT
  GTTTGTTCAT TCCCATTTTG ACCATTATTG GACATAGCAG GTCTTCTCTG GGTCTTCAGC
  CCTCAGCCAT ACTCTCTTGA CTTTACCATG AAGTGAGCCT TCCAATGTTA TTATGTGAGT
  Y
  AGAAACAGGA GTAACCAATC TTCGAAATTA ATGACCAATT CAGAGACAGA TTTCTTCTTA
  GCCTTTAGCT AATTTGGGTG AAAATTTAAG AAACACACCT TGCCCTGTGT GTTTTGACCT
  TTCCTGTTTA ACAGATTAAG TTGAGAAATA TTTAGTTCTG GTACAAACTC ATAGACTATT
  ATAAACTTGG GCACCAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48337468	NES12245702	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33640981					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48337468	NES12245702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:4330868 () rs orientation: forward

Symbol	Name	Function Class
D17Brg125	DNA segment, Chr 17, David E. Bergstrom 125	651 bp proximal
Tssr146295	transcription start site region 146295	1010 bp downstream