rs33642007 SNP Detail

Summary

• ID
  rs33642007
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52315704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT GCCTGTGTTT TGTTTTTGTT
  K
  ACTTTAGTTC CCTTTAGCTA AACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45303490	mCV24651197	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss146590326	ENSMUSSNP4517773	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320303835	CHEV_2_52281212	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33642007					SNP	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52315704 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	within coordinates
Arl5a	ADP-ribosylation factor-like 5A	818 bp upstream
Cpgi11647	CpG island 11647	534 bp distal
Rr556939	regulatory region 556939	802 bp distal
Rr556940	regulatory region 556940	737 bp distal
Rr556941	regulatory region 556941	20 bp distal
Tssr494	transcription start site region 494	749 bp upstream
Tssr17726	transcription start site region 17726	671 bp downstream
Tssr17727	transcription start site region 17727	446 bp downstream
Tssr24072	transcription start site region 24072	886 bp upstream
Tssr24073	transcription start site region 24073	870 bp upstream
Tssr24074	transcription start site region 24074	776 bp upstream