rs33642479 SNP Detail

Summary

• ID
  rs33642479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACG AGCTGACCGA CGCACTGGCC
  R
  CAGCAGCCGC GGCTCCACTG ATGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45303072	mCV25008028	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss146777242	ENSMUSSNP7024837	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33642479					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800026 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	550 bp distal
Rr559724	regulatory region 559724	498 bp proximal
Rr559725	regulatory region 559725	1220 bp proximal
Tssr18508	transcription start site region 18508	1211 bp downstream
Tssr24820	transcription start site region 24820	1212 bp upstream
Tssr24821	transcription start site region 24821	1180 bp upstream
Tssr24822	transcription start site region 24822	1150 bp upstream
Tssr24823	transcription start site region 24823	495 bp upstream
Tssr24824	transcription start site region 24824	456 bp upstream
Tssr24825	transcription start site region 24825	1 bp upstream
Tssr24826	transcription start site region 24826	26 bp downstream
Tssr24827	transcription start site region 24827	43 bp downstream
Tssr24828	transcription start site region 24828	131 bp downstream
Tssr24829	transcription start site region 24829	243 bp downstream
Ttn	titin	within coordinates