rs33643587 SNP Detail

Summary

• ID
  rs33643587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52208993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAACATCCA TTTCTTGAGG CTGACAGCAG CTCTTGTGTC
  TCACATCCTT ACGGAAGTCT AGTGGGATGA ACCTCACTTT CTGTTCTCAG TACTTAGATT
  K
  AGCTGGGTCG GCAGAAAGGA GCAGAGGGTT CCATCCCTGC TCTGGCTTTT GAGTTTCACT
  GAGAGCAGGG GAGCAGATTG AATTTACAAT ACTCCTTAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39561323	mCV25232008	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss145758512	ENSMUSSNP1210212	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss325417412	CHEV_17_52041290	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33643587					SNP	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52208993 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	1008 bp proximal
Rr405357	regulatory region 405357	1830 bp upstream
Tssr148690	transcription start site region 148690	1955 bp downstream
Tssr148691	transcription start site region 148691	1985 bp downstream