rs33643685 SNP Detail

Summary

• ID
  rs33643685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57017921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGCTGGG ACTGAGAGAC CTGCTCTCCC CACAGGCACA
  GGTGATGAAG GAGATGGCCA GGCTCCTGGG AGCACATAGC GGCGGAGCCA CTGCACCAGG
  Y
  TGCTGCTTTG TTGTCTGTCT GCTGCCCGTC CCTCCCTGCA GGCCGCATCA TGGTGGTGTC
  TATTGCCGGG GTGGCCACAG GCTGGATCCG AGTGTCCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39561422	mCV22683318	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145808163	ENSMUSSNP2380034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33643685					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57017921 () rs orientation: forward

Symbol	Name	Function Class
Ccpn-ps	calcyphosine, pseudogene	1130 bp downstream
Ranbp3	RAN binding protein 3	within coordinates
Rr392775	regulatory region 392775	within coordinates
Tssr145329	transcription start site region 145329	987 bp downstream
Tssr145330	transcription start site region 145330	946 bp downstream
Tssr145331	transcription start site region 145331	929 bp downstream
Tssr145332	transcription start site region 145332	904 bp downstream
Tssr145333	transcription start site region 145333	882 bp downstream
Tssr145334	transcription start site region 145334	850 bp downstream
Tssr145335	transcription start site region 145335	21 bp upstream
Tssr148830	transcription start site region 148830	1032 bp upstream