rs33643770 SNP Detail

Summary

• ID
  rs33643770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47015880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGGCCT GCCTCGGGCC
  CCTCCCAGAG CTGCGCGCAG GCCCGGCGGC GGAGGCGCAA GGGGAAAGGC CACGCTCACC
  TTATCCTTCT TCAGTTTATA GGACATCTCG GCCGGTCCAC ACCCGGCCCG GCTCCTGCGG
  CCCCGCTCCG GCTCTGCTCG GCCACACTCG GCCCGCTCGG CGTCTCTTCG CCACCGCCTG
  Y
  GCGCTGCGCC CGGGCCGAGC CGTGGCTGCG CTTCCAATTG GCCCGAACTC TTACAAACCT
  GCCTGAGAAC CAGGAGCCGC CTCCTCGGAT TGGTCATTGG AGCCAAGCAG CTTCCCTTTT
  TTCTCATTGG AAAGAAAGAG TACAAACCGC CAGGGTTCGG CTCCCAGAAT TGGCTGGAGT
  GGAAGGTCCC GCCCTGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39561157	mCV22794291	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145701137	ENSMUSSNP1239715	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33643770					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47015880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	within coordinates
Gm65134	predicted gene, 65134	233 bp upstream
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	within coordinates
Rr331602	regulatory region 331602	1521 bp proximal
Rr339921	regulatory region 339921	within coordinates
Rr370260	regulatory region 370260	within coordinates
Tssr148375	transcription start site region 148375	within coordinates
Tssr148376	transcription start site region 148376	48 bp downstream