rs33644098 SNP Detail

Summary

• ID
  rs33644098
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23864340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG CCGGGGGACC CCAGGCTGCC
  K
  GCCGTCTGAG CTCCGTAGCT TCCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39560996	mCV23796231	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss325326684	CHEV_17_23782333	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33644098					SNP	T	T	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23864340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	within coordinates
Mmp25	matrix metallopeptidase 25	334 bp upstream
Rr339268	regulatory region 339268	within coordinates
Tssr146620	transcription start site region 146620	408 bp upstream
Tssr146621	transcription start site region 146621	370 bp upstream
Tssr146622	transcription start site region 146622	329 bp upstream
Tssr146623	transcription start site region 146623	311 bp upstream
Tssr146624	transcription start site region 146624	293 bp upstream
Tssr146625	transcription start site region 146625	105 bp upstream
Tssr146626	transcription start site region 146626	57 bp upstream