rs33645099 SNP Detail

Summary

• ID
  rs33645099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81010013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATAAAG ACATTTTTTC
  AAATTTTGAA AAGTTTGCTA GTTTCTCAAA AACGAAACTT ATCTAAACGT ATAAAGCATT
  ATGTCGCAGG ACATCACATG TATTAATACA TTTATCATAG TTTCTGTTTG TGGAACTCTA
  AAAAGGCCTT TCTACATATA ATTTTCTCAT TCACATGAAA CACATCCATA CCATACAATC
  Y
  ACATGGAATT TTTAGAAATA TTACAAGGTG TTTAGAAAAA CCAAAGATTT TAATGTTCTA
  TCTGCTGTTT TAAGTCTGGT AAACAACAGG ATCCAATGTT CTGAAACACA GCATATCAGT
  TTGTATGCGT AAAAAATGAG TGTGTGTGTG CACAGTGAGA GTGAACACAC ACATGTGTGG
  TACTGTGGAG ATGAGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39561007	mCV22619534	ABI	CRAMUS_MOUSE	f	SNP		T				C		C
ss62938450	NES17404140	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C		T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33645099					SNP	C	T	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62938450	NES17404140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81010013 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	546 bp upstream
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	613 bp distal
Tssr149503	transcription start site region 149503	1805 bp upstream
Tssr149504	transcription start site region 149504	564 bp upstream