rs33645376 SNP Detail

Summary

• ID
  rs33645376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113619605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCTCT GTTCTCTCCT
  AACCTGCCTC TTCCTCAGTT CCAGTCGTTT CAGTCAGTTG TCCACAAGTT GCAGCGTGAC
  TTGATTTTTT TCTTCTCATT AATCAGTCGT TTCTAACTCT GATACATGGA CTGTGTCCTG
  CTTGCTTGCT TTTTCCACCT TCACTATCAA TACTTTAGGT CTCTCTCTCT CTCTCTCTAT
  M
  TATATATGTA TATATATAAT TTATTTATTT GTTGGTGACA CTTGGAGAAG TCCACTCCCA
  TGCTTTCAGG TGTGTCTTTC TTCCCAAGCA ACTTTTTTTT GTCTAGTAAC ACTTCTGTTT
  TAAAATCTAC ATTTAATACT TCTATAAAGA TTTCAACTCT GCTTCATTTT ATATATACCC
  CAACAGATGA ATTACACTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46300861	mCV23322810	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss323201089	CHEV_9_113699655	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33645376					SNP	C	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113619605 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr198874	regulatory region 198874	605 bp distal
Rr205836	regulatory region 205836	1795 bp proximal
Rr207499	regulatory region 207499	1605 bp distal