rs33647453 SNP Detail

Summary

• ID
  rs33647453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43019433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACCAAGGT CCCTTCCCTA GGTCACACAT AGCCCTTTAC
  CTAGGAAAGT GGCACCAGTG ACCCAATCCC TGGACATGCA GTTTCCAGTG GAACATCCTC
  R
  AGGCCACATT TATCCTCTTA TTCACTGCTT CAATGTGCTT ATGAAGGGCC TGCTGTACCC
  AGGACTGTTG TAAGCATCAG AAATCCACTG TCTAGCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46301264	mCV24039483	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss136387470	ENSMUSSNP4740816	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322936917	CHEV_9_42916221	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33647453					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43019433 () rs orientation: forward

Symbol	Name	Function Class
Rr677325	regulatory region 677325	1661 bp distal
Rr677326	regulatory region 677326	688 bp distal
Rr677327	regulatory region 677327	224 bp distal
Tlcd5	TLC domain containing 5	512 bp downstream
Tssr89078	transcription start site region 89078	1970 bp upstream
Tssr89079	transcription start site region 89079	1942 bp upstream
Tssr89080	transcription start site region 89080	1115 bp upstream
Tssr89081	transcription start site region 89081	1029 bp upstream
Tssr89082	transcription start site region 89082	996 bp upstream