rs33649338 SNP Detail

Summary

• ID
  rs33649338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42175795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCGCCGCGT AGGCGTCCCG CGCTCCCCAC GCCTCCCCGC
  ACCCCCGAAC CAGGTCCAGC ACTCTGCCGG GACTATCCAG GCGCTTCATG ATGCTGCTAC
  R
  GGGCGGACGA AGCTTGCTTT CCTTCCCACT TTCTTCCCGC CCAGAAAGTT GACTAGAATC
  GTGCAAAGGA CCCGGGATGA ATGCAAAATG ACAGCCTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46302089	mCV23263513	ABI	CRAMUS_MOUSE	f	SNP							G	A
ss52006401	NES15025817	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G		A	G	G	G	G	G	G
ss136379352	ENSMUSSNP3844883	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33649338					SNP	G	G	A	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006401	NES15025817	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42175795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	within coordinates
Gm10690	predicted gene 10690	within coordinates
Rr368719	regulatory region 368719	4 bp upstream
Rr401326	regulatory region 401326	5 bp downstream
Rr677189	regulatory region 677189	310 bp distal
Rr677190	regulatory region 677190	30 bp distal
Rr677191	regulatory region 677191	within coordinates
Sc5d	sterol-C5-desaturase	243 bp upstream
Tssr84545	transcription start site region 84545	20 bp downstream
Tssr89018	transcription start site region 89018	280 bp upstream
Tssr89019	transcription start site region 89019	217 bp upstream