rs33649749 SNP Detail

Summary

• ID
  rs33649749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21724528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGCTGTG ACTTATACCA
  ATAGATCATT TGTAGGTGAG AAAACTGGGG CACAGATGTA AGTTGTAAAA TAAAAATGTT
  CTTTTTTTCC AATACCAAAG GTGCCTTTTA CAAATTTATG TTTACCAGAT CACAAATGAG
  GAGGAGGGAC AGAGCCCATA CCCTAGCACC TGCTTACCTA AGTGCTTTTA GTTTATCTTA
  Y
  GGGAGAAAAA CTATAGACAG TCTGCTATGT GACAAAGCCT ATAAACAAGG AATTAGGAAG
  GGACCTTGAC CTTGGGAAAA AACATTTGAT AAGGCTTTGC ATCCTGGAAG TGTAAAACTA
  AAACTAAGTG AAAATCGAGT ATAGGAGGCT ATACTAGGCA GGAAGATTAT GCCTCCACAA
  CCACTGAGCC AACAAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46839578	NES10842448	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33649749					SNP	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46839578	NES10842448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21724528 () rs orientation: forward

Symbol	Name	Function Class
Rr374653	regulatory region 374653	1711 bp upstream