rs33650361 SNP Detail

Summary

• ID
  rs33650361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATATAT CATCTGCTAG
  TGTTGGATAT TAGCTTCTTG GAGGCCAAGT CGACCATCTG GAACCCAAAG AAGACTGTGG
  TCTTACAGAA TCCACACCAT AGTTACCAAG GGGATGGTTA CAGTGAGTGC AGGACAGGCT
  GGGGGTGGGT GGGTGGGTAT GGCCATAGCA TTTGAGCCCT GGATCTCAAA GGATAGCCAT
  Y
  ATTTGTCTTC AACTCTCACT GGATGTTTGA CCTTGGGCCT CAGCTTCTCC ATACCTCAGA
  TAGCTCATGT CAAGAGAGGA ACTAAAGCAA AAGGGAGACA ACAGCTAGAA AATGCTTTGT
  AAGCCCTAAG ATCAAGCTGA GCTTCTTCCT GAAAGAGTCA TAAGCATATG GTGACAGCCG
  CAAGAGGGAG TGTTGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46302006	mCV25163704	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss52013348	NES15030283	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	C	C	T	T	C	T
ss136411249	ENSMUSSNP2914897	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33650361					SNP	C	C	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013348	NES15030283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316533 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	174 bp proximal
Rr677906	regulatory region 677906	511 bp proximal
Tssr84788	transcription start site region 84788	1994 bp downstream
Tssr84789	transcription start site region 84789	1967 bp downstream
Tssr84790	transcription start site region 84790	700 bp upstream
Tssr84791	transcription start site region 84791	831 bp upstream
Tssr84792	transcription start site region 84792	879 bp upstream
Tssr84793	transcription start site region 84793	1884 bp upstream