rs33652152 SNP Detail

Summary

• ID
  rs33652152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21727290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACATGT ATCTGCCAAA
  TTTCTTGTTC TGAGACCTGA AAATTGTTAT AGAAGCCTAT CCAATCCTAA TATTCAGTAT
  TATTCATTTT ATCTTTCCTG CTAGGTGACT GATCTATTCC CCATTTGGCC TCTGTCTTGT
  TCATTACCTT GTTTAATGTT AAGGACTTGT AACAAACCAA CCAAGTCCAA CAGTTTCTAG
  Y
  CAGTTCCTGC TAGGCCCTGA GGGATCAAAG GGGACGTGCA GTCAGAGTCT TCAAAATGAC
  AAACTTTCAG GCTCCAGGTG CCCACATGGA TAGAGCAAAG AGTCAGTTGG CCCCAACTCT
  GAACCACCCC AAAGTAGAGT TCAGATGTTA AAATCCATCA CTATTTCAAC TAGAGAGTAA
  AAGTATGGGT GTATTGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46839662	NES10842263	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33652152					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46839662	NES10842263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21727290 () rs orientation: forward

Symbol	Name	Function Class
Rr374653	regulatory region 374653	within coordinates
Rr574145	regulatory region 574145	within coordinates