rs33652235 SNP Detail

Summary

• ID
  rs33652235
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12819655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGTTAC TTTTTCATTG
  ACAAATAACA TTCACATGTT TTTATGGAAC TTAATGTAAC TTTAGGAGGC ATGTATATAT
  ATTGTGGAAG AAGCAAATCA GACTCATTAA CATATCTAGA CCTCACACAC TCCTGCCACT
  ACTTTATGGG AAGAAATACA CACTGAGGTG AATTGGAATC ACCCTGCTGG CAAACATAAC
  S
  CAAGTGTCAC ATTCAACTCA CTGTTGCCCA TGTTGACACC TTTCCATGTC AGCAACTGTA
  ACTCTACCTT ATTATTCCAA CAGTCACAAA GGAACACATT GACCCCGTGT ACTACAGTTA
  GTTTAGTTTG ATTTCTTGTT CTTGGAGATC AAATTGATTC TCCTTCCAGC TTTCTGTGTC
  AGTCTTGCAC TGGACACATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46839753	NES10975244	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33652235					SNP	C	C	C	C	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46839753	NES10975244	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12819655 () rs orientation: forward

Symbol	Name	Function Class
Gm61865	predicted gene, 61865	within coordinates
Rr690188	regulatory region 690188	1875 bp distal
Tssr163007	transcription start site region 163007	1301 bp downstream