rs33652238 SNP Detail

Summary

• ID
  rs33652238
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12819724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTATATA TATTGTGGAA
  GAAGCAAATC AGACTCATTA ACATATCTAG ACCTCACACA CTCCTGCCAC TACTTTATGG
  GAAGAAATAC ACACTGAGGT GAATTGGAAT CACCCTGCTG GCAAACATAA CCCAAGTGTC
  ACATTCAACT CACTGTTGCC CATGTTGACA CCTTTCCATG TCAGCAACTG TAACTCTACC
  W
  TATTATTCCA ACAGTCACAA AGGAACACAT TGACCCCGTG TACTACAGTT AGTTTAGTTT
  GATTTCTTGT TCTTGGAGAT CAAATTGATT CTCCTTCCAG CTTTCTGTGT CAGTCTTGCA
  CTGGACACAT ATCTAAATAG ACATAACTAA TTATTTCTTT TTAAAAAATT CCTAGAAGTG
  GGATTTCAAG ACCAAAAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46839756	NES10975245	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33652238					SNP	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46839756	NES10975245	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12819724 () rs orientation: forward

Symbol	Name	Function Class
Gm61865	predicted gene, 61865	within coordinates
Rr690188	regulatory region 690188	1944 bp distal
Tssr163007	transcription start site region 163007	1232 bp downstream