rs33652372 SNP Detail

Summary

• ID
  rs33652372
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21726058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATTAGA ACTGATGAGA
  TAAATTCAAA CTGTGAACTG TTGGAGTCTC AAGTGGTCGT TAGCCTTCCT GACCCATACC
  TCACTCCATA AGTCTGACCA GGTGCCTAAC TTATACATTG ACCTTTCACA GTTCTGATAT
  CTGTGGTTTT TCTTTCCCCA TGGTCTTTTC ATCCTCCTGA GTACAGTTTC TCTGCGGTAA
  K
  GCACACCCAT GTCAGTAAGG CCTGCAAGCA TTCCTACTTA TTCAGCACAC AAAGAAGATA
  AAGGAGGCAT TGTTTACTGA GCATCAACTT TGTTCCAGGT AACAGCTCTG TATCATCTCA
  CAGAAATCTT GGCAAAAGAC TAATATCAGC AGGCAAACAT ACATCAGAGC CAAGATTTCA
  AAGCCTGGGG TGTTCTGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46839614	NES10842349	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33652372					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46839614	NES10842349	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21726058 () rs orientation: forward

Symbol	Name	Function Class
Rr374653	regulatory region 374653	181 bp upstream
Rr574145	regulatory region 574145	149 bp proximal