rs33652440 SNP Detail

Summary

• ID
  rs33652440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGCTGG TACTATATAG
  TAGGTGACAA GACAGCCTGG GCTAGAGACA CTTCCTCAAA AATCATTTTG TCTGTGTCCT
  ATGTAAATAA AAGTTTAGAG ACAACATAAA AATAGGTCAA GTTGAGCCAG GTGTTCACAG
  GCCTGTAAAC CCAAATCTGC TGCAGCTGTG GAGGCAGAAA GATCCTACAG GCAATGTCTC
  R
  AGAAAGAGAA TGTAGCTGTG GTCATGATAC CTCACTTCTA TAATCCTGTG TAGGCCTGGC
  TGGCCTTGAA CTCACAGAGC TCTGCCTGCC TCTGCCTTCC GAGTGCTGGG ATTAAAGGCA
  TGCACCACTA CAACTAGCTA CGATTTACTT CTTTAATGTC TACAAGTATT TGCTGCATGG
  ATGTGGGTAC AGCATGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46301928	mCV23033161	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136393679	ENSMUSSNP3720832	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33652440					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218961 () rs orientation: forward

Symbol	Name	Function Class
C2cd2l	C2 calcium-dependent domain containing 2-like	1573 bp downstream
Cpgi21648	CpG island 21648	1590 bp distal
Hinfp	histone H4 transcription factor	1993 bp upstream
Rr195005	regulatory region 195005	40 bp proximal
Rr206299	regulatory region 206299	1360 bp distal
Rr368726	regulatory region 368726	1569 bp downstream
Tssr89139	transcription start site region 89139	1976 bp upstream