rs33652789 SNP Detail

Summary

• ID
  rs33652789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24715476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAGGCCA CCCTCAGTGC CGCTTTTAAA GCCACACATG
  GAGTGAGGGT TCATGGCCTC TCTCTGTTTC TTGATCCCTG TGGGACACTG AGTGGCAGGG
  R
  CAAGAGTTTC TGTCTGCGCC TTTATGATCG TGACATTGAA GACTCTGATA AGCTACCTCT
  AGATAGGGGT GGGGGTGGGG CAACTGAGAG GAACACACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45804269	mCV22685909	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148095166	ENSMUSSNP2623552	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33652789					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24715476 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	1867 bp distal
Rr608341	regulatory region 608341	266 bp proximal
Rr608342	regulatory region 608342	339 bp proximal
Rr608343	regulatory region 608343	519 bp proximal
Rr608344	regulatory region 608344	1704 bp proximal