rs33653096 SNP Detail

Summary

• ID
  rs33653096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12820730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACACTATA AACTTTGCAA TTGTTTTTCT AAGGTTGTTT
  GTTGTTCGTT CAGTGATTTT TTTCCCTCCA TATAGACAGT ACCTTCATGT TCAGTGATAA
  Y
  AGCATTAGAG AGCCTAGAGA GATGGCTCAC TCTGTGTGTG TGTGTAACCT CAGCACTTGG
  GAGGTTGTAG GAGGGCCACA CAGTTGAAGC CATCCTGTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46839765	NES10975193	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33653096					SNP	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46839765	NES10975193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12820730 () rs orientation: forward

Symbol	Name	Function Class
Gm61865	predicted gene, 61865	within coordinates
Tssr163007	transcription start site region 163007	226 bp downstream