rs33653330 SNP Detail

Summary

• ID
  rs33653330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCAGGA AGCTAAGAGA
  TACACGCAGC CTCTGGGTTC TCTTTGTCCT TTTGATATAG CTAGGGATTT TGGCCCACGG
  AATGTTACTG CCCATAGGTC AGGGTGGATC TTCTTACACC AAAGAACTGA GTCCAGATAG
  TCTCTCATTC ATGTTCCTAT AGGCTAACCT GACCTAGAAA ATCCCTCACG GGCAAGCTCA
  Y
  AGGTTTGCCC CTAGATGATT CTAGAGCCCG TCAGGGAGTC AGTCATTAAC CATCTTGCAC
  ACGCATGAGA TATTCTGTTT CAAACAAAAA GTGGAAGGTA CCCAAGGACC AGAACTTATC
  CTAATGACCA TGCACACGCT ATGCTCCCTG CACTCCTGGA ACTGCTTCCA AGCAAGTGGC
  TGTCTCCTCT GCAGCCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss39562200	mCV24482064	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs33653330					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss145714980	ENSMUSSNP4094835	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655290 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1289 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1845 bp downstream
Tssr145094	transcription start site region 145094	1817 bp downstream
Tssr145095	transcription start site region 145095	1769 bp downstream
Tssr145096	transcription start site region 145096	1736 bp downstream
Tssr145097	transcription start site region 145097	731 bp downstream
Tssr145098	transcription start site region 145098	389 bp downstream
Tssr145099	transcription start site region 145099	218 bp upstream
Tssr145100	transcription start site region 145100	247 bp upstream
Tssr145101	transcription start site region 145101	284 bp upstream
Tssr145102	transcription start site region 145102	383 bp upstream
Tssr148525	transcription start site region 148525	428 bp downstream