rs33653720 SNP Detail

Summary

• ID
  rs33653720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124046769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGA ATCTTGAGTG GGTTTATTCT
  Y
  CCCCACTACA TCTTAATTTC ATTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45804650	mCV24596789	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss60835995	NES16018296	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C	C	C	C	C		C	C	C	C		C
ss149200141	ENSMUSSNP3974662	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321672047	CHEV_5_124358715	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33653720					SNP	T	T	T	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835995	NES16018296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124046769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	832 bp distal
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	within coordinates
Rr399353	regulatory region 399353	1373 bp downstream
Tssr48807	transcription start site region 48807	1509 bp downstream
Tssr48808	transcription start site region 48808	1496 bp downstream
Tssr48809	transcription start site region 48809	1414 bp downstream
Tssr48810	transcription start site region 48810	1391 bp downstream
Tssr48811	transcription start site region 48811	1319 bp downstream
Tssr48812	transcription start site region 48812	1146 bp downstream
Tssr48813	transcription start site region 48813	1135 bp downstream
Tssr48814	transcription start site region 48814	1119 bp downstream
Tssr48815	transcription start site region 48815	1099 bp downstream
Tssr48816	transcription start site region 48816	1073 bp downstream
Tssr48817	transcription start site region 48817	592 bp downstream
Tssr48818	transcription start site region 48818	518 bp downstream
Tssr48819	transcription start site region 48819	384 bp upstream
Tssr48820	transcription start site region 48820	418 bp upstream
Tssr53283	transcription start site region 53283	1787 bp downstream