rs33654677 SNP Detail

Summary

• ID
  rs33654677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:23974137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGGAAA TATTGGATTA
  GGATTTATTT TCCTGTTCTA AACTTTTCAC AATGAGTGTA AAGTGTTGAC TTGAAAACAT
  ATATGGCTAT AGTTACCTTA GCTTCAGAAT TTAGTATATA AAATCTCTCT AAAATGTGTT
  TCTTAATGTC TTTTAAGGTA TCATTAATAA TAAGAAAAAC AAAATACTAA TTCTGAAGAC
  Y
  CACATAACAG TAGTGTGCTG CAGGCTGTTC ATACAAGCAT CATTTTATTT TGTAATTGCA
  TTGTCTTCAT TCTTTACATA TGGATTCCTG ATCTTTCTGT AAAGATCTGG AGTTGACAGC
  GTGTTCAGGA CTTGTTTGTG GACTCCTTTA TTGGACATGT ATTAAAATCT CTTGACTGTA
  ACATCTTAGT GTTTTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47824847	NES11962238	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33654677					SNP	T	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47824847	NES11962238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:23974137 () rs orientation: forward

Symbol	Name	Function Class
Gm66949	predicted gene, 66949	within coordinates